package analysis;


/**
 * @author Mathieu Rousseau
 * @email mathieu.rousseau3@mail.mcgill.ca
 */


/** ------------------------------------------------------------------------------------------------------------------
 * start of ClusteringMain class
 * ------------------------------------------------------------------------------------------------------------------  **/
public class ClusteringMain {

	
	/*  start of main method  */
	public static void main(String[] args) {	
		
		//  parameters for the MicroarrayToIF program
		int numberOfStructures;
		int structureFilenameStartIndex;
		
		//  Clustering program object
		Clustering structureClustering = new Clustering();
		
		
		
		
		
		
		
		
		
		
		
		/** ------------------------------------------------------------------------------------------------------------------
		 * 
		 * 
		 * 								HARDCODING OF PARAMETERS
		 * 
		 * 
		 * ------------------------------------------------------------------------------------------------------------------  */
		
		
		
		
		//  set the number of structures that will be clustered
		numberOfStructures = 400;
		
		
		//  set the start index of the structures that will be clustered
		structureFilenameStartIndex = 1;

		
		
		
		/** ------------------------------------------------------------------------------------------------------------------
		 * 
		 * 
		 * 								END OF HARDCODING OF PARAMETERS
		 * 
		 * 
		 * ------------------------------------------------------------------------------------------------------------------  */
		
		
		
		
		
		
		
		
		
		
		
		
		
		
		//  add all of the parameters to the arguments array
		args = new String[2];
		args[0] = String.valueOf(numberOfStructures);
		args[1] = String.valueOf(structureFilenameStartIndex);

		
		//  run the clustering program
		structureClustering.run(args);
		
		
	}/*  end of main method  */

	
}/*  end of ClusteringMain class  */